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In this tutorial you will learn how to move comfortably in the interactive
console of POY. To begin, open POY and from the Analyses menu select
Run Interactive Console.
- A new terminal window should appear and POY should be running
in it. If you are using Mac OS X or Linux, resize it
to your preference. If you are in windows,
unfortunately the terminal can not be resized.
- Now click anywhere in the terminal, and type the command
help (), then press enter.
- The interactive console is composed of four different frames.
All the commands you type will appear
in the interactive console frame.
- Now type the command, report (data). You will see new
information appearing in the output frame.
- If during an interactive session, you would like to repeat a previous
command, press the combination keys Control-p (which we will from now
and on represent as <C-p>). You will see that the last command
report
(data) appears on screen. Using the arrows and the delete keys, modify
that command into report (treestats). Now press enter.
- A lot of text will have appeared in the output window. In order to
scroll up, simply use the up and down arrow keys. The screen should move
one line at a time, letting you see the contents of that frame.
- Scrolling line by line can take a long time, using the
page-up and the page-down keys, the program will scroll up and down, one
page at a time, in the output window.
- First use the <C-p> combination to go back to the help () command.
Then go back to report (diagnosis) using <C-n>.
<C-n> lets you
go forward in your command history. Once in the report
(diagnosis) command, press enter.
- Typing commands can take a long time, and typos will lurk in. To avoid
them, you can use the Tab key let POY autocomplete things for you. For
example, type the following (every occurrence of <TAB> means ``press the
tab key''):
tra<TAB><TAB><TAB><TAB>(static_<TAB>)
You will see how POY auto-completes the commands, and cycles on all
possible matches when more than one possible command is found. The
program will also autocomplete filenames for you.
- Finally, if in the following tutorials, you want to cancel a command
that is being executed, simply press <C-c> (Control-c). That will roll
back the program to the previous interactive state (i.e. the last
time you pressed the <ENTER>).
We are ready to work with actual data. You can get it
here.
Next: Loading and using Sankoff
Up: POY 4.0 Tutorials: general
Previous: POY 4.0 Tutorials: general
Index
Andres Varon, avaron@amnh.org